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Best Blueberry Protein Muffins

Published: Dec 2, 2025 · Modified: Jan 24, 2026 by Olivia · This post may contain affiliate links · Leave a Comment

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Let's have a heart-to-heart: we have all eaten that sad, rubbery "healthy" muffin that tastes more like a hockey puck than a treat. It's the worst! That is why I made it my personal mission to crack the code. These Blueberry Protein Muffins defy the stereotype. Thanks to a secret weapon (Greek yogurt!), they are impossibly moist, tender, and fluffy. They are the best protein muffins for people who actually care about taste, not just macros.

Blueberry Protein Muffins on a dark tray, showcasing their golden muffin tops and bursting blueberries

These high-protein blueberry muffins are made with Greek yogurt, whole wheat flour, and maple syrup. Perfect for healthy breakfasts or snacks, they're naturally sweet with juicy burst blueberries and 9 grams of protein per muffin (thanks to a few simple swaps). You can make them with or without protein powder, and they're so easy that even Adam can help. Mix it, pour it, and bake it. That's it.

Jump to:
  • Why You'll Love This Blueberry Protein Muffins Recipe
  • Ingredients for Blueberry Protein Muffins
  • How to Make Blueberry Protein Muffins
  • My Top Tips for Perfect Blueberry Protein Muffins
  • Little Moments in the Kitchen
  • Substitutions for Blueberry Protein Muffins
  • Variations on Blueberry Protein Muffins
  • Equipment for Making Blueberry Protein Muffins
  • Storage Tips for Blueberry Protein Muffins
  • Adam's Tip for Blueberry Protein Muffins
  • FAQ About Blueberry Protein Muffins
  • Related
  • Pairing
  • recipe

Why You'll Love This Blueberry Protein Muffins Recipe

  • High in protein and naturally sweetened. With Greek yogurt, eggs, and optional protein powder, these muffins deliver a balanced macros with protein-rich profile. They're sweetened with maple syrup or honey, so no refined sugar needed.
  • Soft, fluffy, and bursting with blueberries. Every bite has juicy blueberry bursts in moist muffins with a soft and tender crumb with golden top. They taste like a treat but fuel you like a real meal.
  • Make-ahead and freezer-friendly. These are perfect for meal prep. Bake once, freeze, and enjoy all week. They're the ultimate make-ahead grab-and-go breakfast.

Ingredients for Blueberry Protein Muffins

This recipe uses simple, wholesome ingredients. You can make them with or without protein powder, and they're flexible enough to customize based on what you have in your pantry.

What You'll Need

Grid collage of ingredients for Blueberry Protein Muffins including bananas, cottage cheese, eggs, Greek yogurt, and flour in glass bowls

For the Blueberry Protein Muffins:

  • 1 and ½ cups whole wheat flour or all-purpose flour (or use almond flour for gluten-free)
  • ½ cup vanilla protein powder (optional, but adds extra protein)
  • 1 teaspoon baking powder
  • ½ teaspoon baking soda
  • ¼ teaspoon salt
  • 1 cup plain Greek yogurt (nonfat or full-fat)
  • 2 large eggs
  • ⅓ cup maple syrup or honey
  • ¼ cup melted coconut oil or vegetable oil
  • 1 teaspoon vanilla extract
  • 1 cup fresh or frozen blueberries (if using frozen, don't thaw)
  • Zest of 1 lemon (optional, for lemon blueberry protein muffins)

Optional Add-Ins:

  • 1 mashed ripe banana (for protein banana blueberry muffins)
  • ½ cup cottage cheese (for blueberry protein muffins cottage cheese version)
  • ¼ cup chopped walnuts or almonds

Why These Ingredients Matter

Greek yogurt adds protein and moisture. It's the star ingredient that makes these muffins tender and keeps them from drying out. This high-protein batter with protein powder and Greek yogurt is what makes these muffins so satisfying.

Protein powder boosts the protein content. If you want 9 grams of protein per muffin, add the protein powder. If you prefer blueberry protein muffins without protein powder, just leave it out and they'll still have about 5 to 6 grams of protein per muffin from the Greek yogurt and eggs.

Blueberries add natural sweetness and antioxidants. Fresh or frozen both work perfectly. If using frozen, don't thaw them first or they'll turn the batter purple.

How to Make Blueberry Protein Muffins

Step-by-Step Directions

  1. Preheat your oven to 350°F. Line a 12-cup muffin tin with paper liners or grease the cups with nonstick spray.
  2. Mix the dry ingredients. In a large bowl, whisk together the flour, protein powder (if using), baking powder, baking soda, and salt.
  3. Mix the wet ingredients. In a separate bowl, whisk together the Greek yogurt, eggs, maple syrup, melted oil, vanilla extract, and lemon zest (if using).
  4. Combine wet and dry ingredients. Pour the wet ingredients into the dry ingredients and stir gently until just combined. Don't overmix or the muffins will be tough.
  5. Fold in the blueberries. Gently fold the blueberries into the batter. If using frozen blueberries, toss them in a tablespoon of flour first to prevent them from sinking.
  6. Fill the muffin cups. Divide the batter evenly among the 12 muffin cups, filling each about ¾ full.
  7. Bake for 18 to 22 minutes. The muffins are done when a toothpick inserted into the center comes out clean or with just a few moist crumbs.
  8. Cool in the pan for 5 minutes. Then transfer the muffins to a wire rack to cool completely.

Quick Tip: For bakery-style muffin tops, sprinkle a little coarse sugar on top of each muffin before baking.

My Top Tips for Perfect Blueberry Protein Muffins

  • Don't overmix the batter. Stir just until the flour is incorporated. A few lumps are fine. Overmixing leads to tough, dense muffins.
  • Coat frozen blueberries in flour. This prevents them from sinking to the bottom of the muffins and keeps the batter from turning purple.
  • Use paper liners for easy cleanup. They also make the muffins portable and perfect for grab-and-go breakfasts.
  • Let the muffins cool completely before freezing. This prevents condensation and keeps them from getting soggy.

Little Moments in the Kitchen

The first time I made these, Adam watched me fold the blueberries into the batter and asked, "Why are you being so gentle? Are the blueberries scared?" I laughed and explained that if you stir too hard, the blueberries break and turn everything purple. He nodded seriously and said, "Oh, like when I stir my cereal too fast and the milk splashes everywhere."

When the muffins came out of the oven, he grabbed one (still too hot, as always) and took a bite. His eyes went wide. "Mom, there's a blueberry explosion in my mouth!" Now he calls them "blueberry bomb muffins," and Grandma Viola says they remind her of the muffins she used to buy at the little bakery on the corner when she was young.

If you love easy, protein-packed breakfast recipes, you'll also want to try our Pumpkin Baked Oatmeal. It's another make-ahead favorite.

Substitutions for Blueberry Protein Muffins

  • Whole wheat flour: Swap with all-purpose flour, oat flour, or almond flour for a gluten-free option. Almond flour will make the muffins denser and more cake-like.
  • Protein powder: Leave it out for blueberry protein muffins without protein powder. The muffins will still have 5 to 6 grams of protein from the Greek yogurt and eggs.
  • Greek yogurt: Use cottage cheese blended until smooth for blueberry protein muffins cottage cheese version, or use sour cream or mashed banana.
  • Maple syrup: Swap with honey, agave nectar, or a sugar substitute like monk fruit sweetener for blueberry protein muffins no sugar.
  • Blueberries: Try raspberries, blackberries, or chocolate chips for a fun twist.

Variations on Blueberry Protein Muffins

  • Lemon Blueberry Protein Muffins: Add the zest of 1 lemon to the batter and drizzle the cooled muffins with a simple lemon glaze (½ cup powdered sugar mixed with 1 tablespoon lemon juice).
  • Protein Banana Blueberry Muffins: Mash 1 ripe banana and mix it into the wet ingredients. Reduce the maple syrup to ¼ cup since the banana adds natural sweetness.
  • Blueberry Oatmeal Protein Muffins: Replace ½ cup of the flour with ½ cup rolled oats for extra fiber and a heartier texture.
  • Vegan Blueberry Protein Muffins: Use flax eggs (2 tablespoons ground flaxseed mixed with 6 tablespoons water), coconut yogurt, and vegan protein powder.
  • Kodiak Blueberry Protein Muffins: Use Kodiak Cakes protein pancake mix in place of the flour and protein powder for an ultra-easy version.

If you love simple, healthy muffins, you'll also enjoy our Pancake Sausage Mini Muffins. They're just as easy and just as satisfying.

Equipment for Making Blueberry Protein Muffins

  • 12-cup muffin tin: Standard size works best for this recipe.
  • Paper liners or nonstick spray: Makes cleanup easy and prevents sticking.
  • Two mixing bowls: One for wet ingredients, one for dry.
  • Whisk and spatula: For mixing the batter gently.

Storage Tips for Blueberry Protein Muffins

  • Room temperature: Store in an airtight container for up to 3 days.
  • Refrigerator: Store in an airtight container for up to 5 days. The muffins may dry out slightly, so warm them in the microwave for 15 seconds before eating.
  • Freezer: Wrap each muffin individually in plastic wrap, then place in a freezer-safe zip-top bag. Freeze for up to 3 months. Thaw at room temperature or microwave for 30 to 45 seconds.
  • Pro Tip: I like to freeze them in sets of 2 or 3 so I can grab exactly what I need for breakfast without thawing the whole batch.

For more make-ahead breakfast ideas, try our Apple Cinnamon Cottage Cheese Bake. It's another protein-packed favorite.

Adam's Tip for Blueberry Protein Muffins

"Don't squish the blueberries when you mix them in! Mom says you have to fold them super gently or the whole batter turns purple and looks weird."

FAQ About Blueberry Protein Muffins

Can you add protein powder to blueberry muffins?

Yes! Adding protein powder to blueberry muffins is a great way to boost the protein content. Use vanilla or unflavored protein powder and reduce the flour slightly to keep the texture right. These blueberry muffins with protein powder have about 9 grams of protein per muffin.

Can I just add protein powder to muffins?

You can, but you'll need to adjust the recipe slightly. Protein powder absorbs more liquid than flour, so you may need to add a bit more Greek yogurt or milk to keep the muffins moist. Start by replacing ¼ to ½ cup of the flour with protein powder.

What protein powder works best in muffins?

Whey protein and casein protein both work well in baking. Plant-based protein powders (like pea or brown rice protein) can also work, but they may make the muffins slightly denser. Vanilla or unflavored protein powder is best for muffins.

Is there any protein in a blueberry muffin?

Traditional blueberry muffins have about 3 to 4 grams of protein from the eggs and flour. These high protein blueberry muffins have 8 to 9 grams of protein per muffin thanks to the Greek yogurt and optional protein powder.
For another delicious blueberry recipe, check out this Best of the Best Blueberry Muffins from Allrecipes. It's a classic version that's perfect for special occasions.

Conclusion

I am so happy to report that the "hockey puck" era is officially over. I hope these soft, tender, berry-filled gems restore your faith in healthy baking. You really can have it all!

If you try these, let me know how they turn out! And if you experiment with fun add-ins like lemon zest or chocolate chips, I want to hear about it. For more delicious breakfast inspiration, check out our Greek Yogurt Bagels. Tag me on social media or leave a comment below. Happy baking, and enjoy every protein-packed, blueberry-filled bite!

Related

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  • Red Velvet Cheesecake Layer Cake with a deep red ganache drip, chocolate chips, and a thick creamy cheesecake center.
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Pairing

These are my favorite dishes to serve with Blueberry Protein Muffins:

  • Blueberry swirl yogurt bites on a marble surface, showing creamy frozen yogurt with deep purple blueberry swirls and fresh blueberries
    Easy Blueberry Swirl Yogurt Bites
  • Blueberry overnight oats in glass jar with Greek yogurt, chia seeds, rolled oats and fresh blueberries layered on top
    Easy Blueberry Overnight Oats
  • Lemon Blueberry Loaf on a ceramic plate, showcasing moist crumb with juicy blueberries, topped with lemon glaze and fresh lemon slices.
    Easy Lemon Blueberry Loaf
  • Chicken enchilada rice casserole with melted cheese, saucy rice, corn kernels, and fresh cilantro in a baking dish.
    Easy Chicken Enchilada Rice Casserole

recipe

Blueberry Protein Muffins on a dark tray, showcasing their golden muffin tops and bursting blueberries

Best Blueberry Protein Muffins (High Protein & Moist)

These Blueberry Protein Muffins are our Saturday morning secret weapon! Packed with Greek yogurt and juicy blueberries, they are impossibly moist, naturally sweetened, and boast 9g of protein. It's the perfect healthy breakfast we love making together.
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Course: Breakfast, Snack
Cuisine: American, Healthy
Keyword: Blueberry Protein Muffins, easy protein muffins, Greek yogurt muffins, healthy breakfast recipe, moist blueberry muffins
Prep Time: 15 minutes minutes
Cook Time: 20 minutes minutes
Total Time: 35 minutes minutes
Servings: 12 muffins
Calories: 165kcal
Cost: $8.50

Equipment

  • 1 12-cup muffin tin We use paper liners for easy cleanup!
  • 2 Mixing bowls One large for dry, one medium for wet
  • 1 Whisk
  • 1 Rubber spatula For folding gently

Ingredients

  • 1.5 cups whole wheat flour Or all-purpose flour
  • 0.5 cup vanilla protein powder Optional, use whey or plant-based
  • 1 teaspoon baking powder
  • 0.5 teaspoon baking soda
  • 0.25 teaspoon salt
  • 1 cup plain Greek yogurt Nonfat or full-fat works great
  • 2 large eggs Room temperature is best
  • 0.33 cup maple syrup Or honey
  • 0.25 cup coconut oil Melted, or vegetable oil
  • 1 teaspoon vanilla extract
  • 1 cup blueberries Fresh or frozen, do not thaw
  • 1 teaspoon lemon zest Optional, adds brightness

Instructions

  • First things first, sweetie! Preheat the oven to 350°F (175°C). Go ahead and line our [12-cup Muffin Tin] with those paper liners you like, it makes cleanup so much easier for mom later!
  • In the big bowl, I want you to whisk together the [whole wheat flour], [vanilla protein powder], [baking powder], [baking soda], and [salt]. Whisk it gently so the flour doesn't fly out of the bowl like a snowstorm!
  • In the separate medium bowl, whisk the [plain Greek yogurt], [eggs], [maple syrup], [melted coconut oil], [vanilla extract], and that yummy [lemon zest] if we're using it. This yogurt mixture is the secret weapon that keeps them super moist
  • Pour the wet yogurt mixture into the dry flour mixture. Now, switch to the spatula and stir just until you can't see the flour anymore. Remember what I taught you? Don't overmix, or our muffins will turn into hockey pucks!
  • Here is the most important part. Gently fold in the [blueberries]. Be super soft with them, Livie! If we smash them, the whole batter turns grey and purple. Just a few turns of the spatula is enough
  • Divide the batter evenly into the muffin cups (they should be about ¾ full). Pop them in the oven and bake for 18 to 22 minutes. We'll know they are done when the tops are golden and a toothpick comes out clean
  • I know it smells amazing and you want one right now, but let them cool in the pan for 5 minutes, then move them to a wire rack. If we eat them too hot, they crumble apart!

Notes

  • Mom's Freezer Tip: "These freeze beautifully, honey. Once they are totally cool, we can put them in a ziplock bag in the freezer. Just microwave one for 30 seconds before school for an instant warm breakfast."
  • Frozen Berries: "If we are using frozen blueberries, toss them in a tiny spoonful of flour before adding them. It stops them from sinking to the bottom!"
  • No Protein Powder? "If we run out of powder, just add an extra ¼ cup of flour. They will still be delicious, just slightly less protein."

Nutrition

Serving: 1Muffin | Calories: 165kcal | Carbohydrates: 22g | Protein: 9g | Fat: 5g | Saturated Fat: 3g | Monounsaturated Fat: 1g | Cholesterol: 35mg | Sodium: 180mg | Potassium: 140mg | Fiber: 2g | Sugar: 9g | Vitamin A: 100IU | Vitamin C: 1mg | Calcium: 80mg | Iron: 1mg

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Olivia, the experienced home cook and Fantasy Recipe founder, wearing an apron in the kitchen

hey, I'm Olivia!

your kitchen buddy. I’m here to help you make the cooking process as smooth and stress-free as possible, with simple, flavorful dishes that won’t keep you tied to the stove for hours.

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